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Swedish University of Agricultural Sciences

Veterinary bacteriology: information about important bacteria
Veterinary bacteriology


Species and subspecies

Click on one of the categories below, or base your search on several criteria

No. of matching species/subspecies etc: 278IdNo. of
basepairs		16S rRNA
ACC-No		rRNA
op.		Updated
    Clostridium septicum30U59278 2022-05-18
    Trueperella pyogenes12 295 822X7922562022-05-11
    Neisseria animaloris277KY847916 2022-05-06
    Streptococcus equi subsp. equi142 253 793EF40603262022-05-04
    Plesiomonas shigelloides71M59159 2022-04-15
    Yersinia pseudotuberculosis794 744 671AF36637572022-04-13
    Yersinia pestis784 653 728AF36638362022-04-13
    Yersinia enterocolitica subsp. enterocolitica774 615 899AF36637872022-04-13
    Serratia marcescens subsp. marcescens74AJ233431 2022-04-13
    Proteus vulgaris73DQ885257 2022-04-13
    Proteus mirabilis724 063 606AF00858272022-04-13
    Pantoea agglomerans266AJ233423 2022-04-13
    Morganella morganii subsp. morganii166AY043390 2022-04-13
    Edwardsiella tarda1733 760 463AB05082782022-04-13
    Edwardsiella ictaluri1723 812 315AB05082682022-04-13
    Yersinia ruckeri80AF366385 2022-04-13
    Shigella flexneri764 599 354X9696372022-04-06
    Shigella dysenteriae754 369 232X9696672022-04-06
    Salmonella spp.210 2022-04-06
    Salmonella enterica subsp. enterica704 755 700X8068172022-04-06
    Salmonella enterica subsp. arizonae1574 600 800AF00858072022-04-06
    Salmonella enterica211 2022-04-06
    Klebsiella pneumoniae subsp. pneumoniae695 315 120AF13098182022-04-06
    Klebsiella oxytoca156EU231629 2022-04-06
    Klebsiella mobilis224AB004750 2022-04-06
    Escherichia coli684 646 332X8072572022-04-06
    Citrobacter freundii142AJ233408 2022-04-06
    Borrelia burgdorferi99910 724M5929312022-03-31
    Vibrio cholerae814 033 465X7469582022-03-25
    Lawsonia intracellularis1081 457 619U3014722022-03-22
    Bacillus cereus215 300 915AE016877132022-03-09
    Capnocytophaga canimorsus2652 571 406X97246 2022-03-07
    Fusobacterium necrophorum subsp. necrophorum103AJ867039 2022-03-07
    Dichelobacter nodosus1041 389 350DQ01629032022-02-12
    Streptococcus equi subsp. zooepidemicus152 024 171EF40603452022-02-02
    Pseudomonas aeruginosa656 264 403Z7665142022-02-02
    Streptococcus canis207DQ303184  2022-01-29
    Mycoplasmoides gallisepticum36996 422M2244122022-01-21
    Mycoplasmopsis meleagridis215634 182L24106 2022-01-20
    Mycoplasmopsis synoviae214799 476X5208322022-01-20
    Mesomycoplasma hyopneumoniae37897 405AE01724312022-01-13
    Mesomycoplasma hyorhinis213829 709AF41298212022-01-13
    Ureaplasma diversum209D78650 2022-01-13
    Mycoplasmopsis pulmonis40963 879AF12558212022-01-13
    Listeria monocytogenes132 944 528X5615362022-01-13
    Clostridium perfringens293 031 430AB075767102022-01-13
    Nicoletella semolina61AY508816 2022-01-13
    Mycoplasmopsis felis178841 695U16758 2022-01-13
    Mycoplasmopsis bovis341 003 404U0296822022-01-13
    Mycoplasma mycoides subsp. mycoides381 211 703U2603922022-01-13
    Staphylococcus pseudintermedius1352 572 216AJ78097652022-01-13
    Campylobacter jejuni subsp. jejuni891 641 481L1463032022-01-13
    Dermatophilus congolensis126AJ243918 2022-01-13
    Acholeplasma laidlawii1601 496 992U1490522022-01-13
    Campylobacter fetus subsp. fetus901 773 615DQ17412732022-01-09
    Campylobacter fetus subsp. venerealis91DQ174131 2022-01-09
    Mycoplasmoides pneumoniae39816 394M2906112021-12-16
    Metamycoplasma hyosynoviae216U26730 2021-12-16
    Mesomycoplasma flocculare231778 866L2221012021-12-16
    Mesomycoplasma dispar2301 090 351AF412979 2021-12-16
    Mycoplasmopsis agalactiae33877 438U4476322021-12-09
    Mycoplasma mycoides subsp. capri2061 153 998U2603722021-12-09
    Mycoplasma leachii229U2605422021-12-09
    Mycoplasma capricolum subsp. capripneumoniae351 016 760M9472822021-12-09
    Mycoplasma capricolum subsp. capricolum1191 010 023U2604622021-12-09
    Staphylococcus aureus subsp. aureus202 809 422D83357 62021-12-02
    Streptococcus agalactiae162 211 485AB00247972021-12-02
    Staphylococcus intermedius22D83369 2021-12-02
    Rhodococcus hoagii105 043 170X8061442021-12-02
    Mycobacterium avium subsp. paratuberculosis54 829 781X5293412021-12-02
    Helcococcus ovis278Y16279 2021-12-02
    Leptospira borgpetersenii1163 876 235AM05056922021-12-02
    Francisella tularensis subsp. tularensis621 892 819Z2193132021-12-02
    Erysipelothrix rhusiopathiae431 787 941AB03420072021-12-02
    Clostridium botulinum, group III242 773 157L37590102021-12-02
    Brucella canis1943 312 769L3758432021-12-02
    Bordetella bronchiseptica535 339 179AJ27845232021-12-02
    Bacillus anthracis115 227 419AB190217112021-12-02
    Anaplasma phagocytophilum451 471 282AF17216412021-12-02
    Aeromonas salmonicida subsp. salmonicida874 702 402X7468192021-12-02
    Eperythrozoon felis421 147 259U8856312021-11-18
    Eperythrozoon suis41742 431AY49208612021-11-18
    Paeniclostridium sordellii31AB075771 2021-10-07
    Brachyspira hyodysenteriae973 036 634U1493012021-10-04
    Borrelia anserina208904 790U4228412021-10-04
    Bacillus thuringiensis1875 237 682AF290545142021-10-04
    Bacillus subtilis subsp. subtilis1334 214 000AB042061102021-10-04
    Bacillus licheniformis124 222 645CP00000272021-10-04
    Brachyspira alvinipulli131EF455559 2021-10-04
    Streptococcus suis1472 100 000AB00252542021-10-04
    Campylobacter coli1091 860 000M59073 2021-09-29
    Taylorella equigenitalis501 732 123DQ09955332021-09-26
    Staphylococcus epidermidis2052 499 279D8336352021-09-26
    Mannheimia granulomatis199AF053902 2021-09-26
    Histophilus somni592 007 700AF54938752021-09-26
    Moraxella bovis672 000 000AF005183 2021-09-16
    Mannheimia haemolytica602 681 844AF06069962021-09-16
    Glaesserella parasuis582 269 156 M7506562021-09-16
    Fusobacterium necrophorum subsp. funduliforme153EF447425 2021-09-16
    Enterococcus cecorum2762 421 598NR_024905 2021-09-16
    Corynebacterium freneyi274AJ292762 2021-09-16
    Clostridium tetani322 799 251X7477062021-09-16
    Actinobacillus equuli subsp. equuli107M75072 2021-09-16
    Chlamydophila psittaci961 171 660AB00177812021-08-10
    Bordetella pertussis554 086 189U0495032021-08-07
    Clostridioides difficile264 290 252AB075770112021-07-10
    Helicobacter pylori931 643 831Z2574122021-07-02
    Burkholderia mallei515 835 527AF11018742021-07-02
    Actinobacillus pleuropneumoniae572 274 482AF22428392021-06-29
    Coxiella burnetii1501 995 281AE01682812021-06-29
    Peptoniphilus indolicus158D14147 2021-06-14
    Brachyspira innocens232NR_044763 2021-03-28
    Streptococcus uberis191 852 352AB00252652021-03-11
    Aeromonas hydrophila subsp. hydrophila864 744 448X87271102021-02-28
    Actinobacillus lignieresii106M75068 2021-02-28
    Aliivibrio salmonicida2174 531 626X70643122021-02-27
    Streptococcus dysgalactiae subsp. dysgalactiae17AY584478 2021-02-19
    Staphylococcus schleiferi subsp. coagulans189AB009945 2021-02-18
    Staphylococcus felis122D83364 2021-02-18
    Staphylococcus hyicus subsp. (hyicus)232 472 129D8336862021-02-18
    Clostridium chauvoei25U51843 2021-01-14
    Filifactor villosus264AF537211 2020-12-16
    Actinobaculum suis125S83623 2020-12-10
    Pasteurella multocida subsp. multocida562 257 487AY07899962020-12-10
    Actinobacillus suis1492 484 940AY36289962020-12-10
    Staphylococcus capitis subsp. capitis2752 443 604AB62612762020-12-10
    Nocardia farcinica255Z36936 2020-12-04
    Streptococcus pyogenes181 899 877AB00252162020-11-19
    Micrococcus luteus2232 501 097AJ53619822020-11-12
    Staphylococcus hominis subsp. hominis2702 335 704NR_03695642020-11-12
    Acinetobacter lwoffii1413 184 320X8166552020-11-05
    Corynebacterium diphtheriae subsp. diphtheriae1702 488 000X8191152020-11-05
    Treponema pallidum subsp. pallidum1001 138 011M8872622020-11-05
    Streptococcus pneumoniae1452 046 115AF00393042020-11-05
    Rickettsia prowazekii1461 111 523AJ23527212020-11-05
    Rickettsia helvetica2281 369 927CM001467 (region 522930-524428)12020-11-05
    Porphyromonas gingivalis237AB035459 2020-11-05
    Neisseria gonorrhoeae1742 232 025X0771442020-11-05
    Mycobacterium ulcerans254X88926 2020-11-05
    Mycobacterium leprae73 268 203X5558712020-11-05
    Leuconostoc mesenteroides subsp. mesenteroides2612 075 763NR_074957 2020-11-05
    Legionella pneumophila subsp. pneumophila643 397 754M5915732020-11-05
    Corynebacterium confusum273Y15886 2020-11-05
    Chlamydophila pneumoniae2221 225 935D8571812020-11-05
    Chlamydia trachomatis1711 044 459D8906712020-11-05
    Campylobacter lari1441 562 000L04316 2020-11-05
    Campylobacter jejuni subsp. doylei246DQ174144 2020-11-05
    Brachyspira aalborgi161Z22781 2020-11-05
    Bordetella parapertussis544 773 551AF36657832020-11-05
    Bartonella henselae1381 931 000BX89769922020-11-05
    Staphylococcus warneri271L37603 2020-10-28
    Pasteurella dagmatis155AY362920 2020-10-28
    Pasteurella caballi154AY362918 2020-10-28
    Enterococcus faecium1902 698 137AJ27635562020-10-28
    Corynebacterium bovis32 522 962D38575 2020-10-28
    Vibrio parahaemolyticus835 165 800X74720112020-10-28
    Streptobacillus moniliformis1831 662 578CP001779 52020-10-28
    Bartonella vinsonii subsp. berkhoffii198L35052 2020-10-28
    Bartonella elizabethae197L01260 2020-10-28
    Bartonella clarridgeiae196X89208 2020-10-28
    Vibrio vulnificus845 211 578X7472692020-10-28
    Mycobacterium marinum86 636 827AF45624012020-10-28
    Mycobacterium tuberculosis94 403 837X5889012020-10-28
    Mycobacterium bovis64 345 492X55589 12020-10-28
    Leptospira kirschneri115AY631895 2020-10-28
    Leptospira interrogans1014 627 366Z1281722020-10-28
    Francisella tularensis subsp. holarctica631 895 994AJ69886432020-10-28
    Burkholderia pseudomallei497 247 547DQ10839242020-10-28
    Corynebacterium ulcerans2122 502 095X8425642020-10-28
    Corynebacterium pseudotuberculosis1172 337 913D3857942020-10-28
    Brucella suis483 315 175L2616932020-10-28
    Brucella ovis1953 275 590L2616832020-10-28
    Brucella melitensis473 294 931L2616632020-10-28
    Brucella abortus463 278 307AY51355932020-10-28
    Mycobacterium avium subsp. avium45 475 491AJ53603712020-10-28
    Rickettsia rickettsii441 257 710L3621712020-10-28
    Chlamydophila felis951 166 239D8570112020-10-23
    Listeria ivanovii subsp. ivanovii1682 928 879AJ54993062020-10-19
    Corynebacterium renale105M29553 2020-10-15
    Corynebacterium kutscheri169D37802 2020-10-15
    Corynebacterium cystitidis256X84252 2020-10-15
    Prevotella melaninogenica164L16469 2020-09-30
    Campylobacter upsaliensis110L14628 2020-09-27
    Campylobacter helveticus249U03022 2020-09-27
    Actinobacillus rossi177AY224289 2020-09-21
    Staphylococcus sciuri subsp. sciuri2722 767 666AB662960  2020-09-17
    Staphylococcus chromogenes269D83360 2020-07-12
    Pseudomonas fluorescens2686 511 547FJ972536 2020-06-11
    Ornithobacterium rhinotracheale2672 399 175U87101 2020-06-04
    Porphyromonas levii236L16493 2020-05-28
    Clostridium piliforme28L07416 2020-05-07
    Avibacterium paragallinarum136AY498868 2020-03-18
    Chlamydophila pecorum2211 106 409D8831712020-03-05
    Chlamydophila caviae2201 173 390D8570812020-03-05
    Chlamydophila abortus941 144 377D8570912020-03-05
    Chlamydia suis219U73110 2020-03-05
    Chlamydia muridarum2181 072 950D8571822020-03-05
    Vibrio alginolyticus82X56576 2020-01-23
    Clostridium novyi272 547 720L37594102020-01-23
    Clostridium haemolyticum162AB037910 2020-01-23
    Brachyspira suanatina140DQ473576 2020-01-23
    Brachyspira pilosicoli982 586 443U1492712020-01-23
    Brachyspira intermedia1323 304 788U2303312020-01-23
    Paenibacillus larvae1794 046 337X6061982019-10-29
    Gallibacterium anatis176AF228001 2019-05-21
    Bibersteinia trehalosi127AY362927 2019-02-15
    Weissella koreensis263AY035891 2019-01-17
    Brochothrix thermosphacta163M58798 2018-12-18
    Staphylococcus saprophyticus subsp. saprophyticus2582 516 575GQ45606262018-12-18
    Bartonella schoenbuchensis251AJ278187 2018-12-14
    Clostridium tyrobutyricum262 2018-12-14
    Enterococcus hirae2602 827 741Y17302 2018-12-08
    Pasteurella pneumotropica130M75083 2018-12-06
    Mannheimia varigena2002 228 291AF05389362018-12-06
    Lactobacillus plantarum subsp. plantarum1433 308 274D7921052018-11-29
    Moraxella osloensis201AF005190 2018-09-27
    Stenotrophomonas maltophilia1594 851 126AB00850942018-09-27
    Pseudomonas anguilliseptica66X99540 2018-09-27
    Francisella noatunensis subsp. noatunensis167EF490212 2018-09-19
    Aeromonas salmonicida subsp. achromogenes88AY910844 2018-09-13
    Listonella anguillarum85X16895 2018-09-13
    Streptococcus devriesei182AJ564067 2018-05-31
    Riemerella anatipestifer1752 155 121U6010132017-11-09
    Streptococcus dysgalactiae subsp. equisimilis1212 106 340AJ31964352017-11-09
    Streptococcus equi subsp. ruminatorum191AJ605748 2017-11-09
    Taylorella asinigenitalis1371 638 559AF06772932017-11-09
    Helicobacter heilmannii243HM625820 2017-11-09
    Brucella pinnipedialis193AM158981 2017-11-09
    Brucella ceti192AM158982 2017-11-09
    Bordetella avium523 732 255AF17766632017-11-09
    Clostridium botulinum, group IV204X68316 2017-09-17
    Clostridium botulinum, group I2023 863 450L3758582017-09-17
    Clostridium botulinum, group II2033 659 644L37592112017-09-17
    Clostridium colinum259X76748 2017-06-20
    Campylobacter hyointestinalis subsp. lawsonii248AF097685 2017-06-14
    Campylobacter hyointestinalis subsp. hyointestinalis247AF097689 2017-06-14
    Renibacterium salmoninarum23 155 250X5160122017-05-10
    Actinomyces hordeovulneris257 2017-05-10
    Actinomyces viscosus1203 133 750AJ234053 2017-05-10
    Actinomyces bovis118X53224 2017-05-10
    Enterococcus faecalis1243 218 031DQ41181442017-03-31
    Nocardia asteroides123X84850 2017-02-02
    Crossiella equi252AF114806 2017-02-02
    Mycobacterium caprae253AJ131120 2017-01-25
    Fusobacterium equinum152AJ295750 2016-08-30
    Fusobacterium canifelinum151AY162221 2016-08-30
    Helicobacter suis244EF204589 2016-05-12
    Helicobacter salomonis240U89351 2016-05-12
    Helicobacter mustelae245M35048 2016-05-12
    Helicobacter hepaticus921 799 146U0757512016-05-12
    Helicobacter bizzozeronii 238Y09404 2016-05-12
    Helicobacter felis241M57398 2016-05-12
    Helicobacter canis239AY631945 2016-05-12
    Helicobacter bilis242U18766 2016-05-12
    Prevotella heparinolytica235L16487 2016-05-04
    Arcobacter skirrowii250L14625 2016-05-04
    Arcobacter butzleri1112 341 251AY62111652016-05-04
    Treponema pedis1882 889 325EF061268 22016-03-30
    Treponema phagedenis139DQ470655 2016-03-18
    Flavobacterium columnare1283 162 432D1265952016-03-08
    Flavobacterium psychrophilum1292 861 988AF09099162016-03-08
    Bacteroides fragilis1025 205 140X8393562016-03-06
    Microcystis aeruginosa1845 842 795AP00955222016-03-02
    Borrelia coriaceae234U42286 2016-02-10
    Borrelia theileri233KF569941 2016-02-10
    Borrelia afzelii113905 394AY34203422016-02-10
    Borrelia garinii114904 246X8519912016-02-10
    Treponema paraluiscuniculi1341 133 390JX12054622016-02-10
    Erysipelothrix tonsillarum227AB055906 2016-01-14
    Ehrlichia canis1811 315 030M7322112015-12-16
    Ehrlichia ruminantium1121 499 920X6165912015-12-16
    Neorickettsia risticii165879 977 M2129012015-12-16
    Staphylococcus schleiferi subsp. schleiferi2262 528 396S8356852015-12-09
    Melissococcus plutonius1801 891 014X7575142015-12-03
    Streptococcus porcinus148X58315 2015-12-02
    Listeria innocua1863 011 208X9852762015-11-27
    Staphylococcus aureus subsp. anaerobius185D83355 2015-11-27
    Staphylococcus delphini225AB009938  2015-11-27

News

New families introduced within the order Enterobacterales
Phylogenetic tree for the order <i>Enterobacteriales</i>.

The order Enterobacterales (formerly called Enterobacteriales) previously consisted of bacteria with different properties and phylogenetically, these bacteria were far apart. In order for the taxonomy to be more in line with phylogeny, some of these bacteria have, therefore, been sorted into 6 new families.

Published 2022-04-13. Read more...

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