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Swedish University of Agricultural Sciences

Veterinary bacteriology: information about important bacteria
Veterinary bacteriology


Species and subspecies

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The search can be limited to:

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Tick one or more criteria for selection:

 species primarily of interest in human medicine
 bacteria in the normal flora which can sometimes cause disease
 zoonotic bacteria
 causes hemolysis (at least some strains)
 spore forming
 motile
 notifiable diseases and bacteria
No. of matching species/subspecies etc: 278IdNo. of
basepairs
16S rRNA
ACC-No
rRNA
op.
Updated
    Acholeplasma laidlawii1601 496 992U1490522016-01-28
    Acinetobacter lwoffii1413 184 320X8166552020-11-05
    Actinobacillus equuli subsp. equuli107M75072 2021-02-27
    Actinobacillus lignieresii106M75068 2021-02-28
    Actinobacillus pleuropneumoniae572 274 482AF22428392021-03-11
    Actinobacillus rossi177AY224289 2020-09-21
    Actinobacillus suis1492 484 940AY36289962020-12-10
    Actinobaculum suis125S83623 2020-12-10
    Actinomyces bovis118X53224 2017-05-10
    Actinomyces hordeovulneris257 2017-05-10
    Actinomyces viscosus1203 133 750AJ234053 2017-05-10
    Aeromonas hydrophila subsp. hydrophila864 744 448X87271102021-02-28
    Aeromonas salmonicida subsp. salmonicida874 702 402X7468192021-02-28
    Aeromonas salmonicida subsp. achromogenes88AY910844 2018-09-13
    Aliivibrio salmonicida2174 531 626X70643122021-02-27
    Anaplasma phagocytophilum451 471 282AF17216412020-10-28
    Arcobacter butzleri1112 341 251AY62111652016-05-04
    Arcobacter skirrowii250L14625 2016-05-04
    Avibacterium paragallinarum136AY498868 2020-03-18
    Bacillus anthracis115 227 419AB190217112021-03-16
    Bacillus cereus215 300 915AE016877132021-03-16
    Bacillus licheniformis124 222 645CP00000272020-12-10
    Bacillus subtilis subsp. subtilis1334 214 000AB042061102020-05-07
    Bacillus thuringiensis1875 237 682AF290545142020-05-07
    Bacteroides fragilis1025 205 140X8393562016-03-06
    Bartonella clarridgeiae196X89208 2020-10-28
    Bartonella elizabethae197L01260 2020-10-28
    Bartonella henselae1381 931 000BX89769922020-11-05
    Bartonella schoenbuchensis251AJ278187 2018-12-14
    Bartonella vinsonii subsp. berkhoffii198L35052 2020-10-28
    Bibersteinia trehalosi127AY362927 2019-02-15
    Bordetella avium523 732 255AF17766632017-11-09
    Bordetella bronchiseptica535 339 179AJ27845232021-03-18
    Bordetella parapertussis544 773 551AF36657832020-11-05
    Bordetella pertussis554 086 189U0495032020-11-05
    Borrelia afzelii113905 394AY34203422016-02-10
    Borrelia anserina208904 790U4228412016-02-10
    Borrelia burgdorferi99910 724M5929312020-10-28
    Borrelia coriaceae234U42286 2016-02-10
    Borrelia garinii114904 246X8519912016-02-10
    Borrelia theileri233KF569941 2016-02-10
    Brachyspira aalborgi161Z22781 2020-11-05
    Brachyspira alvinipulli131EF455559 2020-01-23
    Brachyspira hyodysenteriae973 036 634U1493012021-04-22
    Brachyspira innocens232NR_044763 2021-03-28
    Brachyspira intermedia1323 304 788U2303312020-01-23
    Brachyspira pilosicoli982 586 443U1492712020-01-23
    Brachyspira suanatina140DQ473576 2020-01-23
    Brochothrix thermosphacta163M58798 2018-12-18
    Brucella abortus463 278 307AY51355932020-10-28
    Brucella canis1943 312 769L3758432020-10-28
    Brucella ceti192AM158982 2017-11-09
    Brucella melitensis473 294 931L2616632020-10-28
    Brucella ovis1953 275 590L2616832020-10-28
    Brucella pinnipedialis193AM158981 2017-11-09
    Brucella suis483 315 175L2616932020-10-28
    Burkholderia mallei515 835 527AF11018742021-03-31
    Burkholderia pseudomallei497 247 547DQ10839242020-10-28
    Campylobacter coli1091 860 000M59073 2021-01-04
    Campylobacter fetus subsp. fetus901 773 615DQ17412732020-09-27
    Campylobacter fetus subsp. venerealis91DQ174131 2020-09-27
    Campylobacter helveticus249U03022 2020-09-27
    Campylobacter hyointestinalis subsp. hyointestinalis247AF097689 2017-06-14
    Campylobacter hyointestinalis subsp. lawsonii248AF097685 2017-06-14
    Campylobacter jejuni subsp. jejuni891 641 481L1463032021-02-02
    Campylobacter jejuni subsp. doylei246DQ174144 2020-11-05
    Campylobacter lari1441 562 000L04316 2020-11-05
    Campylobacter upsaliensis110L14628 2020-09-27
    Capnocytophaga canimorsus2652 571 406X97246 2020-11-05
    Chlamydia muridarum2181 072 950D8571822020-03-05
    Chlamydia suis219U73110 2020-03-05
    Chlamydia trachomatis1711 044 459D8906712020-11-05
    Chlamydophila abortus941 144 377D8570912020-03-05
    Chlamydophila caviae2201 173 390D8570812020-03-05
    Chlamydophila felis951 166 239D8570112020-10-23
    Chlamydophila pecorum2211 106 409D8831712020-03-05
    Chlamydophila pneumoniae2221 225 935D8571812020-11-05
    Chlamydophila psittaci961 171 660AB00177812020-10-28
    Citrobacter freundii142AJ233408 2020-11-26
    Clostridioides difficile264 290 252AB075770112020-09-30
    Clostridium botulinum, group I2023 863 450L3758582017-09-17
    Clostridium botulinum, group II2033 659 644L37592112017-09-17
    Clostridium botulinum, group III242 773 157L37590102017-09-17
    Clostridium botulinum, group IV204X68316 2017-09-17
    Clostridium chauvoei25U51843 2021-01-14
    Clostridium colinum259X76748 2017-06-20
    Clostridium haemolyticum162AB037910 2020-01-23
    Clostridium novyi272 547 720L37594102020-01-23
    Clostridium perfringens293 031 430AB075767102020-10-28
    Clostridium piliforme28L07416 2020-05-07
    Clostridium septicum30U59278 2020-01-23
    Clostridium tetani322 799 251X7477062021-01-03
    Clostridium tyrobutyricum262 2018-12-14
    Corynebacterium bovis32 522 962D38575 2020-10-28
    Corynebacterium confusum273Y15886 2020-11-05
    Corynebacterium cystitidis256X84252 2020-10-15
    Corynebacterium diphtheriae subsp. diphtheriae1702 488 000X8191152020-11-05
    Corynebacterium freneyi274AJ292762 2021-04-09
    Corynebacterium kutscheri169D37802 2020-10-15
    Corynebacterium pseudotuberculosis1172 337 913D3857942020-10-28
    Corynebacterium renale105M29553 2020-10-15
    Corynebacterium ulcerans2122 502 095X8425642020-10-28
    Coxiella burnetii1501 995 281AE01682812020-10-28
    Crossiella equi252AF114806 2017-02-02
    Dermatophilus congolensis126AJ243918 2020-10-28
    Dichelobacter nodosus1041 389 350DQ01629032020-09-30
    Edwardsiella ictaluri1723 812 315 AB05082682018-05-03
    Edwardsiella tarda1733 760 463 AB05082782018-05-03
    Ehrlichia canis1811 315 030M7322112015-12-16
    Ehrlichia ruminantium1121 499 920X6165912015-12-16
    Enterococcus cecorum2762 421 598NR_024905 2021-04-09
    Enterococcus faecalis1243 218 031DQ41181442017-03-31
    Enterococcus faecium1902 698 137AJ27635562020-10-28
    Enterococcus hirae2602 827 741Y17302 2018-12-08
    Erysipelothrix rhusiopathiae431 787 941AB03420072020-10-28
    Erysipelothrix tonsillarum227AB055906 2016-01-14
    Escherichia coli684 646 332X8072572020-12-10
    Filifactor villosus264AF537211 2020-12-16
    Flavobacterium columnare1283 162 432D1265952016-03-08
    Flavobacterium psychrophilum1292 861 988AF09099162016-03-08
    Francisella noatunensis subsp. noatunensis167EF490212 2018-09-19
    Francisella tularensis subsp. tularensis621 892 819Z2193132020-10-28
    Francisella tularensis subsp. holarctica631 895 994AJ69886432020-10-28
    Fusobacterium canifelinum151AY162221 2016-08-30
    Fusobacterium equinum152AJ295750 2016-08-30
    Fusobacterium necrophorum subsp. necrophorum103AJ867039 2020-12-10
    Fusobacterium necrophorum subsp. funduliforme153EF447425 2020-12-10
    Gallibacterium anatis176AF228001 2019-05-21
    Glaesserella parasuis582 269 156 M7506562020-10-09
    Helcococcus ovis278 2021-05-07
    Helicobacter bilis242U18766 2016-05-12
    Helicobacter bizzozeronii 238Y09404 2016-05-12
    Helicobacter canis239AY631945 2016-05-12
    Helicobacter felis241M57398 2016-05-12
    Helicobacter heilmannii243HM625820 2017-11-09
    Helicobacter hepaticus921 799 146U0757512016-05-12
    Helicobacter mustelae245M35048 2016-05-12
    Helicobacter pylori931 643 831Z2574122020-11-05
    Helicobacter salomonis240U89351 2016-05-12
    Helicobacter suis244EF204589 2016-05-12
    Histophilus somni592 007 700AF54938752021-01-01
    Klebsiella mobilis224AB004750 2020-09-15
    Klebsiella oxytoca156EU231629 2020-09-15
    Klebsiella pneumoniae subsp. pneumoniae695 315 120AF13098182021-03-11
    Lactobacillus plantarum subsp. plantarum1433 308 274D7921052018-11-29
    Lawsonia intracellularis1081 457 619U3014722017-06-14
    Legionella pneumophila subsp. pneumophila643 397 754M5915732020-11-05
    Leptospira borgpetersenii1163 876 235AM05056922020-10-28
    Leptospira interrogans1014 627 366Z1281722020-10-28
    Leptospira kirschneri115AY631895 2020-10-28
    Leuconostoc mesenteroides subsp. mesenteroides2612 075 763NR_074957 2020-11-05
    Listeria innocua1863 011 208X9852762015-11-27
    Listeria ivanovii subsp. ivanovii1682 928 879AJ54993062020-10-19
    Listeria monocytogenes132 944 528X5615362020-10-28
    Listonella anguillarum85X16895 2018-09-13
    Mannheimia granulomatis199AF053902 2018-12-06
    Mannheimia haemolytica602 681 844AF06069962019-10-03
    Mannheimia varigena2002 228 291AF05389362018-12-06
    Melissococcus plutonius1801 891 014X7575142015-12-03
    Micrococcus luteus2232 501 097AJ53619822020-11-12
    Microcystis aeruginosa1845 842 795AP00955222016-03-02
    Moraxella bovis672 000 000AF005183 2018-09-27
    Moraxella osloensis201AF005190 2018-09-27
    Morganella morganii subsp. morganii166AY043390 2020-10-28
    Mycobacterium avium subsp. avium45 475 491AJ53603712020-10-28
    Mycobacterium avium subsp. paratuberculosis54 829 781X5293412017-01-25
    Mycobacterium bovis64 345 492X55589 12020-10-28
    Mycobacterium caprae253AJ131120 2017-01-25
    Mycobacterium leprae73 268 203X5558712020-11-05
    Mycobacterium marinum86 636 827AF45624012020-10-28
    Mycobacterium tuberculosis94 403 837X5889012020-10-28
    Mycobacterium ulcerans254X88926 2020-11-05
    Mycoplasma agalactiae33877 438U4476322016-01-28
    Mycoplasma bovis341 003 404U0296822016-01-28
    Mycoplasma capricolum subsp. capripneumoniae351 016 760M9472822016-01-26
    Mycoplasma capricolum subsp. capricolum1191 010 023U2604622016-01-26
    Mycoplasma dispar230AF412979 2016-01-27
    Mycoplasma felis178U16758 2016-01-28
    Mycoplasma flocculare231778 866L2221012016-08-28
    Mycoplasma gallisepticum36996 422M22441 22016-01-27
    Mycoplasma haemofelis421 147 259U8856312016-01-27
    Mycoplasma hyopneumoniae37897 405AE01724312016-12-19
    Mycoplasma hyorhinis213829 709AF41298212016-12-19
    Mycoplasma hyosynoviae216U26730 2016-01-28
    Mycoplasma leachii229U2605422016-01-26
    Mycoplasma meleagridis215L24106 2016-01-28
    Mycoplasma mycoides subsp. mycoides381 211 703U2603922016-12-13
    Mycoplasma mycoides subsp. capri2061 153 998U2603722016-01-26
    Mycoplasma pneumoniae39816 394M29061 12020-11-05
    Mycoplasma pulmonis40963 879AF12558212016-01-28
    Mycoplasma suis41742 431AY49208612016-01-27
    Mycoplasma synoviae214799 476X5208322016-01-28
    Neisseria animaloris277KY847916 2021-04-22
    Neisseria gonorrhoeae1742 232 025X0771442020-11-05
    Neorickettsia risticii165879 977 M2129012015-12-16
    Nicoletella semolina61AY508816 2018-11-14
    Nocardia asteroides123X84850 2017-02-02
    Nocardia farcinica255Z36936 2020-12-04
    Ornithobacterium rhinotracheale2672 399 175U87101 2020-06-04
    Paenibacillus larvae1794 046 337X6061982019-10-29
    Paeniclostridium sordellii31AB075771 2020-01-23
    Pantoea agglomerans266AJ233423 2020-11-05
    Pasteurella caballi154AY362918 2020-10-28
    Pasteurella dagmatis155AY362920 2020-10-28
    Pasteurella multocida subsp. multocida562 257 487AY07899962020-12-10
    Pasteurella pneumotropica130M75083 2018-12-06
    Peptoniphilus indolicus158D14147 2021-05-04
    Porphyromonas gingivalis237AB035459 2020-11-05
    Porphyromonas levii236L16493 2020-05-28
    Plesiomonas shigelloides71M59159 2018-05-17
    Prevotella heparinolytica235L16487 2016-05-04
    Prevotella melaninogenica164L16469 2020-09-30
    Proteus mirabilis724 063 606AF00858272020-09-15
    Proteus vulgaris73DQ885257 2020-09-15
    Pseudomonas aeruginosa656 264 403Z7665142020-12-10
    Pseudomonas anguilliseptica66X99540 2018-09-27
    Pseudomonas fluorescens2686 511 547FJ972536 2020-06-11
    Renibacterium salmoninarum23 155 250X5160122017-05-10
    Rhodococcus equi105 043 170X8061442020-12-27
    Rickettsia helvetica2281 369 927CM001467 (region 522930-524428)12020-11-05
    Rickettsia prowazekii1461 111 523AJ23527212020-11-05
    Rickettsia rickettsii441 257 710L3621712020-10-28
    Riemerella anatipestifer1752 155 121U6010132017-11-09
    Salmonella enterica subsp. enterica704 755 700X80681 72020-10-28
    Salmonella enterica subsp. arizonae1574 600 800 AF00858072020-11-05
    Salmonella enterica211 2019-10-10
    Salmonella spp.210 2019-10-10
    Serratia marcescens subsp. marcescens74AJ233431 2018-03-29
    Shigella dysenteriae754 369 232X9696672018-01-25
    Shigella flexneri764 599 354X9696372020-10-19
    Staphylococcus aureus subsp. aureus202 809 422D83357 62021-02-17
    Staphylococcus aureus subsp. anaerobius185D83355 2015-11-27
    Staphylococcus capitis subsp. capitis2752 443 604AB62612762020-12-10
    Staphylococcus chromogenes269D83360 2020-07-12
    Staphylococcus delphini225AB009938  2015-11-27
    Staphylococcus epidermidis2052 499 279D8336352020-11-05
    Staphylococcus felis122D83364 2021-02-18
    Staphylococcus hominis subsp. hominis2702 335 704NR_03695642020-11-12
    Staphylococcus hyicus subsp. (hyicus)232 472 129D8336862021-02-18
    Staphylococcus intermedius22D83369 2015-11-27
    Staphylococcus pseudintermedius1352 572 216AJ78097652021-02-18
    Staphylococcus saprophyticus subsp. saprophyticus2582 516 575GQ45606262018-12-18
    Staphylococcus schleiferi subsp. coagulans189AB009945 2021-02-18
    Staphylococcus schleiferi subsp. schleiferi2262 528 396S8356852015-12-09
    Staphylococcus sciuri subsp. sciuri2722 767 666AB662960  2020-09-17
    Staphylococcus warneri271L37603 2020-10-28
    Stenotrophomonas maltophilia1594 851 126AB00850942018-09-27
    Streptobacillus moniliformis1831 662 578CP001779 52020-10-28
    Streptococcus agalactiae162 211 485AB00247972021-02-18
    Streptococcus canis207DQ303184  2020-10-28
    Streptococcus devriesei182AJ564067 2018-05-31
    Streptococcus dysgalactiae subsp. dysgalactiae17AY584478 2021-02-19
    Streptococcus dysgalactiae subsp. equisimilis1212 106 340AJ31964352017-11-09
    Streptococcus equi subsp. equi142 253 793EF40603262020-12-10
    Streptococcus equi subsp. zooepidemicus152 024 171EF40603452020-10-28
    Streptococcus equi subsp. ruminatorum191AJ605748 2017-11-09
    Streptococcus pneumoniae1452 046 115AF00393042020-11-05
    Streptococcus porcinus148X58315 2015-12-02
    Streptococcus pyogenes181 899 877AB00252162020-11-19
    Streptococcus suis1472 100 000AB00252542020-12-10
    Streptococcus uberis191 852 352AB00252652021-03-11
    Taylorella asinigenitalis1371 638 559AF06772932017-11-09
    Taylorella equigenitalis501 732 123DQ09955332016-01-14
    Treponema pallidum subsp. pallidum1001 138 011M8872622020-11-05
    Treponema paraluiscuniculi1341 133 390JX12054622016-02-10
    Treponema pedis1882 889 325EF061268 22016-03-30
    Treponema phagedenis139DQ470655 2016-03-18
    Trueperella pyogenes12 295 822X7922562021-03-06
    Ureaplasma diversum209D78650 2020-10-28
    Vibrio alginolyticus82X56576 2020-01-23
    Vibrio cholerae814 033 465X7469582020-11-05
    Vibrio parahaemolyticus835 165 800X74720112020-10-28
    Vibrio vulnificus845 211 578X7472692020-10-28
    Weissella koreensis263AY035891 2019-01-17
    Yersinia enterocolitica subsp. enterocolitica774 615 899AF36637872020-12-10
    Yersinia pestis784 653 728AF36638362020-09-15
    Yersinia pseudotuberculosis794 744 671AF36637572020-10-28
    Yersinia ruckeri80AF366385 2020-09-15

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