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Swedish University of Agricultural Sciences

Veterinary bacteriology: information about important bacteria
Veterinary bacteriology


Species and subspecies

Click on one of the categories below, or base your search on several criteria

No. of matching species/subspecies etc: 278IdNo. of
basepairs
16S rRNA
ACC-No
rRNA
op.
Updated
    Burkholderia pseudomallei497 247 547DQ10839242020-10-28
    Mycobacterium marinum86 636 827AF45624012020-10-28
    Pseudomonas fluorescens2686 511 547FJ972536 2020-06-11
    Pseudomonas aeruginosa656 264 403Z7665142021-09-26
    Microcystis aeruginosa1845 842 795AP00955222016-03-02
    Burkholderia mallei515 835 527AF11018742021-07-02
    Mycobacterium avium subsp. avium45 475 491AJ53603712020-10-28
    Bordetella bronchiseptica535 339 179AJ27845232021-12-02
    Klebsiella pneumoniae subsp. pneumoniae695 315 120AF13098182021-12-02
    Bacillus cereus215 300 915AE016877132021-10-04
    Bacillus thuringiensis1875 237 682AF290545142021-10-04
    Bacillus anthracis115 227 419AB190217112021-12-02
    Vibrio vulnificus845 211 578X7472692020-10-28
    Bacteroides fragilis1025 205 140X8393562016-03-06
    Vibrio parahaemolyticus835 165 800X74720112020-10-28
    Rhodococcus hoagii105 043 170X8061442021-12-02
    Stenotrophomonas maltophilia1594 851 126AB00850942018-09-27
    Mycobacterium avium subsp. paratuberculosis54 829 781X5293412021-12-02
    Bordetella parapertussis544 773 551AF36657832020-11-05
    Salmonella enterica subsp. enterica704 755 700X80681 72021-12-02
    Yersinia pseudotuberculosis794 744 671AF36637572020-10-28
    Aeromonas hydrophila subsp. hydrophila864 744 448X87271102021-02-28
    Aeromonas salmonicida subsp. salmonicida874 702 402X7468192021-12-02
    Yersinia pestis784 653 728AF36638362021-07-05
    Escherichia coli684 646 332X8072572021-12-02
    Leptospira interrogans1014 627 366Z1281722020-10-28
    Yersinia enterocolitica subsp. enterocolitica774 615 899AF36637872021-12-02
    Salmonella enterica subsp. arizonae1574 600 800 AF00858072020-11-05
    Shigella flexneri764 599 354X9696372020-10-19
    Aliivibrio salmonicida2174 531 626X70643122021-02-27
    Mycobacterium tuberculosis94 403 837X5889012020-10-28
    Shigella dysenteriae754 369 232X9696672018-01-25
    Mycobacterium bovis64 345 492X55589 12020-10-28
    Clostridioides difficile264 290 252AB075770112021-07-10
    Bacillus licheniformis124 222 645CP00000272021-10-04
    Bacillus subtilis subsp. subtilis1334 214 000AB042061102021-10-04
    Bordetella pertussis554 086 189U0495032021-08-07
    Proteus mirabilis724 063 606AF00858272020-09-15
    Paenibacillus larvae1794 046 337X6061982019-10-29
    Vibrio cholerae814 033 465X7469582020-11-05
    Leptospira borgpetersenii1163 876 235AM05056922021-12-02
    Clostridium botulinum, group I2023 863 450L3758582017-09-17
    Edwardsiella ictaluri1723 812 315 AB05082682018-05-03
    Edwardsiella tarda1733 760 463 AB05082782018-05-03
    Bordetella avium523 732 255AF17766632017-11-09
    Clostridium botulinum, group II2033 659 644L37592112017-09-17
    Legionella pneumophila subsp. pneumophila643 397 754M5915732020-11-05
    Brucella suis483 315 175L2616932020-10-28
    Brucella canis1943 312 769L3758432021-12-02
    Lactobacillus plantarum subsp. plantarum1433 308 274D7921052018-11-29
    Brachyspira intermedia1323 304 788U2303312020-01-23
    Brucella melitensis473 294 931L2616632020-10-28
    Brucella abortus463 278 307AY51355932020-10-28
    Brucella ovis1953 275 590L2616832020-10-28
    Mycobacterium leprae73 268 203X5558712020-11-05
    Enterococcus faecalis1243 218 031DQ41181442017-03-31
    Acinetobacter lwoffii1413 184 320X8166552020-11-05
    Flavobacterium columnare1283 162 432D1265952016-03-08
    Renibacterium salmoninarum23 155 250X5160122017-05-10
    Actinomyces viscosus1203 133 750AJ234053 2017-05-10
    Brachyspira hyodysenteriae973 036 634U1493012021-10-04
    Clostridium perfringens293 031 430AB075767102021-09-16
    Listeria innocua1863 011 208X9852762015-11-27
    Listeria monocytogenes132 944 528X5615362021-09-29
    Listeria ivanovii subsp. ivanovii1682 928 879AJ54993062020-10-19
    Treponema pedis1882 889 325EF061268 22016-03-30
    Flavobacterium psychrophilum1292 861 988AF09099162016-03-08
    Enterococcus hirae2602 827 741Y17302 2018-12-08
    Staphylococcus aureus subsp. aureus202 809 422D83357 62021-12-02
    Clostridium tetani322 799 251X7477062021-09-16
    Clostridium botulinum, group III242 773 157L37590102021-12-02
    Staphylococcus sciuri subsp. sciuri2722 767 666AB662960  2020-09-17
    Enterococcus faecium1902 698 137AJ27635562020-10-28
    Mannheimia haemolytica602 681 844AF06069962021-09-16
    Brachyspira pilosicoli982 586 443U1492712020-01-23
    Staphylococcus pseudintermedius1352 572 216AJ78097652021-10-10
    Capnocytophaga canimorsus2652 571 406X97246 2020-11-05
    Clostridium novyi272 547 720L37594102020-01-23
    Staphylococcus schleiferi subsp. schleiferi2262 528 396S8356852015-12-09
    Corynebacterium bovis32 522 962D38575 2020-10-28
    Staphylococcus saprophyticus subsp. saprophyticus2582 516 575GQ45606262018-12-18
    Corynebacterium ulcerans2122 502 095X8425642020-10-28
    Micrococcus luteus2232 501 097AJ53619822020-11-12
    Staphylococcus epidermidis2052 499 279D8336352021-09-26
    Corynebacterium diphtheriae subsp. diphtheriae1702 488 000X8191152020-11-05
    Actinobacillus suis1492 484 940AY36289962020-12-10
    Staphylococcus hyicus subsp. (hyicus)232 472 129D8336862021-02-18
    Staphylococcus capitis subsp. capitis2752 443 604AB62612762020-12-10
    Enterococcus cecorum2762 421 598NR_024905 2021-09-16
    Ornithobacterium rhinotracheale2672 399 175U87101 2020-06-04
    Arcobacter butzleri1112 341 251AY62111652016-05-04
    Corynebacterium pseudotuberculosis1172 337 913D3857942020-10-28
    Staphylococcus hominis subsp. hominis2702 335 704NR_03695642020-11-12
    Trueperella pyogenes12 295 822X7922562021-12-02
    Actinobacillus pleuropneumoniae572 274 482AF22428392021-06-29
    Glaesserella parasuis582 269 156 M7506562021-09-16
    Pasteurella multocida subsp. multocida562 257 487AY07899962020-12-10
    Streptococcus equi subsp. equi142 253 793EF40603262021-10-07
    Neisseria gonorrhoeae1742 232 025X0771442020-11-05
    Mannheimia varigena2002 228 291AF05389362018-12-06
    Streptococcus agalactiae162 211 485AB00247972021-12-02
    Riemerella anatipestifer1752 155 121U6010132017-11-09
    Streptococcus dysgalactiae subsp. equisimilis1212 106 340AJ31964352017-11-09
    Streptococcus suis1472 100 000AB00252542021-10-04
    Leuconostoc mesenteroides subsp. mesenteroides2612 075 763NR_074957 2020-11-05
    Streptococcus pneumoniae1452 046 115AF00393042020-11-05
    Streptococcus equi subsp. zooepidemicus152 024 171EF40603452021-10-07
    Histophilus somni592 007 700AF54938752021-09-26
    Moraxella bovis672 000 000AF005183 2021-09-16
    Coxiella burnetii1501 995 281AE01682812021-06-29
    Bartonella henselae1381 931 000BX89769922020-11-05
    Streptococcus pyogenes181 899 877AB00252162020-11-19
    Francisella tularensis subsp. holarctica631 895 994AJ69886432020-10-28
    Francisella tularensis subsp. tularensis621 892 819Z2193132021-12-02
    Melissococcus plutonius1801 891 014X7575142015-12-03
    Campylobacter coli1091 860 000M59073 2021-09-29
    Streptococcus uberis191 852 352AB00252652021-03-11
    Helicobacter hepaticus921 799 146U0757512016-05-12
    Erysipelothrix rhusiopathiae431 787 941AB03420072021-12-02
    Campylobacter fetus subsp. fetus901 773 615DQ17412732020-09-27
    Taylorella equigenitalis501 732 123DQ09955332021-09-26
    Streptobacillus moniliformis1831 662 578CP001779 52020-10-28
    Helicobacter pylori931 643 831Z2574122021-07-02
    Campylobacter jejuni subsp. jejuni891 641 481L1463032021-12-02
    Taylorella asinigenitalis1371 638 559AF06772932017-11-09
    Campylobacter lari1441 562 000L04316 2020-11-05
    Ehrlichia ruminantium1121 499 920X6165912015-12-16
    Acholeplasma laidlawii1601 496 992U1490522021-12-02
    Anaplasma phagocytophilum451 471 282AF17216412021-12-02
    Lawsonia intracellularis1081 457 619U3014722017-06-14
    Dichelobacter nodosus1041 389 350DQ01629032021-09-26
    Rickettsia helvetica2281 369 927CM001467 (region 522930-524428)12020-11-05
    Ehrlichia canis1811 315 030M7322112015-12-16
    Rickettsia rickettsii441 257 710L3621712020-10-28
    Chlamydophila pneumoniae2221 225 935D8571812020-11-05
    Mycoplasma mycoides subsp. mycoides381 211 703U2603922021-12-02
    Chlamydophila caviae2201 173 390D8570812020-03-05
    Chlamydophila psittaci961 171 660AB00177812021-08-10
    Chlamydophila felis951 166 239D8570112020-10-23
    Mycoplasma mycoides subsp. capri2061 153 998U2603722021-12-02
    Eperythrozoon felis421 147 259U8856312021-11-18
    Chlamydophila abortus941 144 377D8570912020-03-05
    Treponema pallidum subsp. pallidum1001 138 011M8872622020-11-05
    Treponema paraluiscuniculi1341 133 390JX12054622016-02-10
    Rickettsia prowazekii1461 111 523AJ23527212020-11-05
    Chlamydophila pecorum2211 106 409D8831712020-03-05
    Chlamydia muridarum2181 072 950D8571822020-03-05
    Chlamydia trachomatis1711 044 459D8906712020-11-05
    Mycoplasma capricolum subsp. capripneumoniae351 016 760M9472822021-11-18
    Mycoplasma capricolum subsp. capricolum1191 010 023U2604622021-11-25
    Mycoplasmopsis bovis341 003 404U0296822021-12-02
    Mycoplasmoides gallisepticum36996 422M2244122021-12-02
    Mycoplasmopsis pulmonis40963 879AF12558212021-11-25
    Borrelia burgdorferi99910 724M5929312021-12-02
    Borrelia afzelii113905 394AY34203422016-02-10
    Borrelia anserina208904 790U4228412021-10-04
    Borrelia garinii114904 246X8519912016-02-10
    Mesomycoplasma hyopneumoniae37897 405AE01724312021-12-02
    Neorickettsia risticii165879 977 M2129012015-12-16
    Mycoplasmopsis agalactiae33877 438U4476322021-11-25
    Mesomycoplasma hyorhinis213829 709AF41298212021-12-02
    Mycoplasmoides pneumoniae39816 394M2906112021-11-25
    Mycoplasmopsis synoviae214799 476X5208322021-11-25
    Mesomycoplasma flocculare231778 866L2221012021-11-18
    Eperythrozoon suis41742 431AY49208612021-11-18
    Streptococcus dysgalactiae subsp. dysgalactiae17AY584478 2021-02-19
    Staphylococcus intermedius22D83369 2021-12-02
    Staphylococcus schleiferi subsp. coagulans189AB009945 2021-02-18
    Clostridium chauvoei25U51843 2021-01-14
    Clostridium piliforme28L07416 2020-05-07
    Clostridium septicum30U59278 2020-01-23
    Paeniclostridium sordellii31AB075771 2021-10-07
    Helcococcus ovis278Y16279 2021-12-02
    Neisseria animaloris277KY847916 2021-09-16
    Nicoletella semolina61AY508816 2021-09-26
    Pseudomonas anguilliseptica66X99540 2018-09-27
    Plesiomonas shigelloides71M59159 2021-09-22
    Proteus vulgaris73DQ885257 2021-09-22
    Serratia marcescens subsp. marcescens74AJ233431 2018-03-29
    Yersinia ruckeri80AF366385 2020-09-15
    Vibrio alginolyticus82X56576 2020-01-23
    Listonella anguillarum85X16895 2018-09-13
    Aeromonas salmonicida subsp. achromogenes88AY910844 2018-09-13
    Campylobacter fetus subsp. venerealis91DQ174131 2020-09-27
    Fusobacterium necrophorum subsp. necrophorum103AJ867039 2021-09-16
    Corynebacterium renale105M29553 2020-10-15
    Actinobacillus lignieresii106M75068 2021-02-28
    Actinobacillus equuli subsp. equuli107M75072 2021-09-16
    Campylobacter upsaliensis110L14628 2020-09-27
    Leptospira kirschneri115AY631895 2020-10-28
    Actinomyces bovis118X53224 2017-05-10
    Staphylococcus felis122D83364 2021-02-18
    Nocardia asteroides123X84850 2017-02-02
    Actinobaculum suis125S83623 2020-12-10
    Dermatophilus congolensis126AJ243918 2020-10-28
    Bibersteinia trehalosi127AY362927 2019-02-15
    Pasteurella pneumotropica130M75083 2018-12-06
    Brachyspira alvinipulli131EF455559 2021-10-04
    Avibacterium paragallinarum136AY498868 2020-03-18
    Treponema phagedenis139DQ470655 2016-03-18
    Brachyspira suanatina140DQ473576 2020-01-23
    Citrobacter freundii142AJ233408 2021-09-22
    Streptococcus porcinus148X58315 2015-12-02
    Fusobacterium canifelinum151AY162221 2016-08-30
    Fusobacterium equinum152AJ295750 2016-08-30
    Fusobacterium necrophorum subsp. funduliforme153EF447425 2021-09-16
    Pasteurella caballi154AY362918 2020-10-28
    Pasteurella dagmatis155AY362920 2020-10-28
    Klebsiella oxytoca156EU231629 2020-09-15
    Peptoniphilus indolicus158D14147 2021-06-14
    Brachyspira aalborgi161Z22781 2020-11-05
    Clostridium haemolyticum162AB037910 2020-01-23
    Brochothrix thermosphacta163M58798 2018-12-18
    Prevotella melaninogenica164L16469 2020-09-30
    Morganella morganii subsp. morganii166AY043390 2020-10-28
    Francisella noatunensis subsp. noatunensis167EF490212 2018-09-19
    Corynebacterium kutscheri169D37802 2020-10-15
    Chlamydia suis219U73110 2020-03-05
    Gallibacterium anatis176AF228001 2019-05-21
    Actinobacillus rossi177AY224289 2020-09-21
    Mycoplasmopsis felis178U16758 2021-12-02
    Streptococcus devriesei182AJ564067 2018-05-31
    Staphylococcus aureus subsp. anaerobius185D83355 2015-11-27
    Streptococcus equi subsp. ruminatorum191AJ605748 2017-11-09
    Brucella ceti192AM158982 2017-11-09
    Brucella pinnipedialis193AM158981 2017-11-09
    Bartonella clarridgeiae196X89208 2020-10-28
    Bartonella elizabethae197L01260 2020-10-28
    Bartonella vinsonii subsp. berkhoffii198L35052 2020-10-28
    Mannheimia granulomatis199AF053902 2021-09-26
    Moraxella osloensis201AF005190 2018-09-27
    Clostridium botulinum, group IV204X68316 2017-09-17
    Streptococcus canis207DQ303184  2020-10-28
    Ureaplasma diversum209D78650 2021-11-25
    Salmonella spp.210 2019-10-10
    Salmonella enterica211 2019-10-10
    Mycoplasmopsis meleagridis215L24106 2021-11-25
    Metamycoplasma hyosynoviae216U26730 2021-12-02
    Klebsiella mobilis224AB004750 2020-09-15
    Staphylococcus delphini225AB009938  2015-11-27
    Erysipelothrix tonsillarum227AB055906 2016-01-14
    Mycoplasma leachii229U2605422021-11-25
    Mesomycoplasma dispar230AF412979 2021-11-18
    Brachyspira innocens232NR_044763 2021-03-28
    Borrelia theileri233KF569941 2016-02-10
    Borrelia coriaceae234U42286 2016-02-10
    Prevotella heparinolytica235L16487 2016-05-04
    Porphyromonas levii236L16493 2020-05-28
    Porphyromonas gingivalis237AB035459 2020-11-05
    Helicobacter bizzozeronii 238Y09404 2016-05-12
    Helicobacter canis239AY631945 2016-05-12
    Helicobacter salomonis240U89351 2016-05-12
    Helicobacter felis241M57398 2016-05-12
    Helicobacter bilis242U18766 2016-05-12
    Helicobacter heilmannii243HM625820 2017-11-09
    Helicobacter suis244EF204589 2016-05-12
    Helicobacter mustelae245M35048 2016-05-12
    Campylobacter jejuni subsp. doylei246DQ174144 2020-11-05
    Campylobacter hyointestinalis subsp. hyointestinalis247AF097689 2017-06-14
    Campylobacter hyointestinalis subsp. lawsonii248AF097685 2017-06-14
    Campylobacter helveticus249U03022 2020-09-27
    Arcobacter skirrowii250L14625 2016-05-04
    Bartonella schoenbuchensis251AJ278187 2018-12-14
    Crossiella equi252AF114806 2017-02-02
    Mycobacterium ulcerans254X88926 2020-11-05
    Mycobacterium caprae253AJ131120 2017-01-25
    Nocardia farcinica255Z36936 2020-12-04
    Corynebacterium cystitidis256X84252 2020-10-15
    Actinomyces hordeovulneris257 2017-05-10
    Clostridium colinum259X76748 2017-06-20
    Clostridium tyrobutyricum262 2018-12-14
    Weissella koreensis263AY035891 2019-01-17
    Filifactor villosus264AF537211 2020-12-16
    Pantoea agglomerans266AJ233423 2020-11-05
    Staphylococcus chromogenes269D83360 2020-07-12
    Staphylococcus warneri271L37603 2020-10-28
    Corynebacterium confusum273Y15886 2020-11-05
    Corynebacterium freneyi274AJ292762 2021-09-16

News

The revised taxonomy of the mollicutes

The revised taxonomy of mollicutes (mycoplasmas) has now been introduced on VetBact, which means that many of the species have been given new genus names or moved to another higher taxon. 

Published 2021-11-25. Read more...

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